Publications & Presentations

Lustig, Brooke S

Publications & Presentations

Selected Publications/Proceedings at SJSU

Nepal, R., Spencer, J., Bhogal, G., Nedunuri, A., Poelman, T., Kamath, T., Chung, E., Kantardjieff, K., Gottlieb, A. and Lustig, B. “Logistic Regression Models to Predict Solvent Accessible Residues Using Sequence and Homology-Based Qualitative and Quantitative Descriptors Applied to a Domain-Complete X-ray Structure Learning Set” (2015) J. Appl. Crystallog. 48, 1976-1984.

Rose, D., Nepal, R., Mishra, R., Lau, R., Gholizadeh, S. and Lustig, B. “Novel application of query-based qualitative predictors for characterization of solvent accessible residues in conjunction with protein sequence homology” (2011) Proceedings of the 22nd International Workshop on Database and Expert Systems Applications, 70-74. http://ieeexplore.ieee.org/stamp/stamp.jsp?tp=&arnumber=6059796

Liao, H., Yeh, W., Chiang, D., Jernigan, R. L. and Lustig, B. “Protein sequence entropy is closely related to packing density and hydrophobicity” (2005) Prot. Engr. 18, 59-64.

Wander, D. S., Yang, F., McNeil, M and Lustig, B. “Scoring DNA sequence alignment using energetics of hybridization” (2003) Proceedings of Annual Meeting of American Institute of Chemical Engineers T2/555b(1-8).

Hsieh, M., Collins, E. D., Blomquist, T. and Lustig, B. "Flexibility of BIV TAR-Tat: Models of peptide binding" (2002) J. Biomol. Struct. Dyn. 20, 243-251.

Lustig, B. and Jeang K.-T. "Biological applications of hammerhead ribozymes as anti-viral molecules" (2001) Current Medicinal Chemistry 8, 1181-1187.

Lustig, B., Bahar, I. and Jernigan, R. L. "RNA bulge entropies correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access" (1998) Nucleic Acids Res. 26, 5212-5217.

Lustig, B., Arora, S. and Jernigan, R. L. "RNA base-amino acid interaction strengths derived from structures and sequences" (1997) Nucleic Acids Res. 25, 2562-2565.

Lustig, B. and Jernigan, R. L. "Consistencies of individual DNA base-amino acid interactions in structures and sequences" (1995) Nucleic Acids Res. 23, 4707-4711.


Other Selected Publications

Lustig, B., Lin, N. H., Smith, S. M., Jernigan, R. L. and Jeang, K.-T. "A small modified hammerhead ribozyme and its conformational characteristics determined by mutagenesis and lattice calculation" (1995) Nucleic Acids Res. 23, 3531-3538.

Lustig, B., Covell, D. G. and Jernigan, R. L. "Conformations of t-RNA: Base pairing and stacking" (1994) J. Biomol. Struct. Dyn. 12, 145-161.

Lustig, B. and Fink, A. L. "Secondary structure formation precedes tertiary structure in the refolding of ribonuclease A" (1992) Biochim. Biophys. Acta. 1121, 229-233.

Lustig, B. and Fink, A. L. "The thermal denaturation of ribonuclease A in aqueous methanol solvents" (1992) Biochim. Biophys. Acta. 1119, 205-210.

Fink, A. L., Anderson, W. D., Hattersly, J. E. and Lustig, B. "The effect of methanol and temperature on the kinetics of refolding of ribonuclease A" (1988) FEBS Lettr. 236, 190-194.