Publications
Image of FISH probe-labeled TM7 bacteria filaments (blue) in the human oral cavity.
All cells are also labeled green with the DNA-binding fluorescent dye YOPRO-1 to provide
quantification of all cells in this complex microbial community. (Ouverney et al. 2003)
- Abrams M, Barton D, and Ouverney C. 2012. Genomic Characteristics of an Environmental Microbial Community Harboring a Novel Human Uncultured TM7 Bacterium Associated with Oral Diseases. Open Access Scientific Reports, 1:276. doi: 10.4172/scientificreports.276
- Dinis JM, Barton DE, Ghadiri J, Surendar D, Reddy K, Velasquez F, Chaffee CL, Lee MCW, Gavrilova H, Ozuna H, Smits SA, and Ouverney CC. 2011. In Search of an Uncultured Human-Associated TM7 Bacterium in the Environment. PLoS ONE 6(6): e21280. doi:10.1371/journal.pone.0021280
- Smits SA and Ouverney CC. 2010. jsPhyloSVG: A Javascript Library for Visualizing Interactive and Vector-Based Phylogenetic Trees on the Web. PLoS ONE 5(8): e12267. doi:10.1371/journal.pone.0012267
- Smits, Samuel A and Ouverney CC. 2010. Phylometrics: a pipeline for infering phylogenetic trees from a sequence relationship network perspective. BMC Bioinformatics, 11 Suppl 6: S18
- Marcy Y, Ouverney C, Bik EM, Lösekann T, Ivanova N, Martin HG, Szeto E, Platt D, Hugenholtz P, Relman DA, Quake SR. 2007. Dissecting biological "dark matter" with single-cell genetic analysis of rare and uncultivated TM7 microbes from the human mouth. PNAS 104(29): 11889-94
- Ouverney CC, Armitage GC, and Relman DA. 2004. Use of Cloned Artificial Targets for FISH (catFISH) for the optimization of oligonucleotide probe hybridization conditions with 16S rRNA clones for in situ quantification of uncultivated prokayotic cells. In G. A. Kowalchuk, F. J. de Bruijn, I. M. Head, A. D. L Akkermans, and J. D. van Elsas, editors. Molecular Microbial Ecology Manual, 2nd edition. Chapter 3.12: 727-742-169. Kluwer Academic Publishers, Dordrecht
- Ouverney CC and Fuhrman JA. 2004. Correlating single-cell count with function in mixed natural microbial communities through STARFISH. In G. A. Kowalchuk, F. J. de Bruijn, I. M. Head, A. D. L. Akkermans, and J. D. van Elsas, editors. Molecular Microbial Ecology Manual, 2nd edition. Chapter 8.08: 1689-1710. Kluwer Academic Publishers, Dordrecht
- Lepp PW, Brinig MM, Ouverney CC, Palm K, Armitage GC, and Relman DA. 2004. Methanogenic Archaea and human periodontal disease. PNAS, 101(16): 6176-6181
- Ouverney CC, Armitage GC, and Relman DA. 2003. Single-cell enumeration of an uncultivated TM7 subgroup in the human subgingival crevice. Applied and Environmental Microbiology, 69 (10): 6294-6298
- Maywald M, Herbay A, Fredricks DN, Ouverney CC, Kosek JC, and Relman DA. 2003. Cultivation of Tropheryma whipplei from Cerebrospinal Fluid. J. of Infectious Disease, 188: 801-888
- Brinig MM, Lepp PW, Ouverney CC, Armitage GC, and Relman DA. 2003. Prevalence of Bacteria of Division TM7 in human subgingival plaque and their association with disease. Applied and Environmental Microbiology, 69(3):1687-1694
- Ouverney CC and Fuhrman JA. 2000. Marine planktonic Archaea take up amino acids. Applied and Environmental Microbiology, 66 (11): 4829-4833
- Ouverney CC and Fuhrman JA. 1999. Combined microautoradiography-16S rRNA probe technique for the determination of radioisotope uptake by specific microbial cell types in situ. Applied and Environmental Microbiology. 65 (4):1746-1752
- Ouverney CC. 1999. Dissecting the Marine bacterioplankton "black box" by type and function through FISH and STARFISH, Ph.D. Dissertation, University of Southern California.
- Fuhrman JA and Ouverney CC. 1998. Marine microbial diversity studied via 16S rRNA sequences: coastal cloning results and counting of native archaea with fluorescent single cell probes. Aquatic Ecology. 32: 3-5
- Ouverney CC and Fuhrman JA. 1997. Increase in fluorescence intensity of 16S rRNA in situ hybridization in natural samples treated with chloramphenicol. Applied and Environmental Microbiology, 63(7): 2735-2740
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Kitting CL, Ouverney CC, and Canabal II F. 1993. Small fishes concentrated during the first five years outside an experimental wastewater marsh in San Francisco Bay. Selected proceedings of a Society of Wetland Scientists, Western Chapter. U.C. Davis, CA, March 25-27.
