Facilities & Administrative Costs FAQs

1) What Are Indirect Costs or Facilities and Administrative Costs?

Please note that the term facilities and administrative (F&A) costs is the federal government term for what was previously referred to as indirect costs. Many sponsors have phased out the term "indirect costs" and replaced it with the term "F&A costs."

Facilities and administrative (F&A) costs are those that are incurred for sponsored programs operating expenses and costs that cannot be readily associated with a single project, account, or transaction. Reimbursements for those costs are paid by sponsors to the institution (San José State University and the San José State University Research Foundation). F&A rates for educational institutions are reviewed and approved by the U.S. Department of Health and Human Services (DHHS) every four to five years.

Examples of F&A costs include: 

  • Depreciation and interest costs associated with the university's physical plant
  • Operating and maintenance costs such as utility costs, security costs, and custodial costs
  • Common administrative functions such as payroll and purchasing

2) Why are F&A costs reimbursed by the sponsoring agencies?

The operation of any enterprise, whether it is non-profit or for-profit, involves costs. In order to fully pay SJSU for the costs of its sponsored research and educational activities, F&A costs must be reimbursed by sponsoring agencies. If these costs are not reimbursed, the university itself would have to pay for them. This, of course, would have an adverse impact on department budgets, student fees, and university resources. Sponsors recognize this fact and, with few exceptions, are willing to pay for F&A costs. The SJSU Research Foundation is directed by the CSU Office of the Chancellor to include the proper F&A costs in proposal budgets and to collect these funds on behalf of SJSU.

3) What do F&A costs include?

  • Building use
  • Library use
  • Improvement use
  • Equipment use
  • Operations and maintenance
  • General and departmental administration (accounting, human resources,procurement, insurance, legal)
  • Sponsored projects administration (proposal and grant/contract management, information services)

4) What F&A costs are NOT:

  • F&A costs are not a tax or "transaction costs,” such as the cost of cutting a check.
  • F&A recoveries are not all kept by SJSU Research Foundation but are used to reimburse the university.
  • F&A costs are not taken out of a grant or contract; they are built into it.
  • F&A costs are not discretionary or arbitrary.

5) How are F&A rates determined?

The procedure for calculating F&A costs is prescribed for all universities by the federal government's Office of Management and Budget (OMB). SJSU and the SJSU Research Foundation work together to determine what the university’s F&A costs are, and present the documentation to the government for review and audit. 

The U.S. Department of Health and Human Services (DHHS) is the federal agency (referred to as cognizant agency) that audits this process for SJSU, and it is with DHHS that the SJSU Research Foundation signs the Colleges and Universities Rate Agreement [pdf] that specifies the F&A rates used when determining budgets.

6) What are SJSU’s current F&A rates?

As with most universities, SJSU has F&A rates that are specific to the type of project being conducted (research, instruction, or other activities) and to the site at which the project will be conducted (on or off campus). The rates are as follows and are in effect until amended.

SJSU Main Campus


  • On: 46.5%
  • Off: 26%


  • On: 55.2%
  • Off: 26%


  • On: 44.6%
  • Off: 26%

SJSU Moss Landing Marine Laboratories


  • On: 52.5%
  • Off: 26%


  • On: 42.9%
  • Off: 26%


  • On: 27.5%
  • Off: 26%


On-Campus Program

The majority of activities are conducted using facilities where space-related costs (e.g. rent, utilities and maintenance) are paid for by the university or its affiliates, and are not charged directly in the project budget.

Off-Campus Program

The majority of activities are conducted (1) in leased facilities where space-related costs (e.g. rent, utilities and maintenance) are charged directly in the project budget, or (2) in facilities made available (at no cost) to the program by a non-university organization.

Certain projects do not require a “facility” in that all work (up through analysis) is done in the field. These types of projects are usually in the field over an uninterrupted period of time and would be considered “off-campus.” In the case where the majority of work is in the field without the use of university or university affiliate owned facilities such as buildings, trailers, or vessels, that work would be considered off-campus.


Refers to all research and development activities that are sponsored by Federal and non-Federal agencies and organizations. This term includes activities involving the training of individuals in research techniques (commonly called research training) where such activities utilize the same facilities as other research and development activities and where such activities are not included in the instruction function of the university.


Specific instructional or training activity established by grant, contract, or cooperative agreement. This term does not include the training of individuals in research techniques, commonly referred to as research training.


Sponsored activities programs and projects financed by Federal and non-Federal agencies and organizations that involve the performance of work other than instruction and organized research. Examples of such programs and projects are health service projects and community service programs.


Stands for Modified Total Direct Costs. Full F&A costs are applied on an MTDC basis, which means that certain cost categories of direct costs are excluded when calculating F&A for a given project.

7) What items are excluded from F&A?

The following cost categories are excluded from a Modified Total Direct Cost base:

  • Capital expenditures (buildings; equipment costing more than $5,000 and with a useful life of more than one year; alterations and renovations)
  • That portion of subawards over $25,000
  • Patient care costs
  • Participant support costs for workshops and conferences and student support costs such as stipends, scholarships and fellowships. (Note: these cost reimbursements are generally made directly to the participants or students and are identified as such in the budget.)

8) Will adding F&A costs to my budget hurt the chances of my project being funded?

No. Most sponsors expect to see F&A costs. A well-planned budget includes F&A. As long as all direct- cost items are realistic, F&A will not affect a proposal’s competitiveness. This is true for two reasons. First, other applicants will also be including F&A costs in their budgets. Second, funding agencies recognize that F&A is a necessary part of a budget and do not discriminate against institutions that include F&A. The substance and content of a proposal, including its objectives, methodology, and care of preparation is far more important than F&A in determining whether or not a project gets funded.

9) How do San José State University and the Research Foundations F&A costs compare to other major universities?

San José State University and the Research Foundation’s F&A rates are average when compared to similar institutions across California, although variations in F&A rates from university to university are common. Some institutions have rates above 70%; others charge as little as 35%. When calculating F&A, some institutions use a Modified Total Direct Cost base and others use a Salaries, Wages, Benefits or Total Direct Cost base. There are dozens of factors that account for differences in F&A rates, including costs of heating and cooling, age of buildings, amount of administrative activity devoted to research management, need for replacement of research equipment, and the "balance" between research and instruction on campus.

10) A colleague of mine at another institution and I are applying to the same  program. Her institution is willing to charge less than their full F&A rate. Why can’t SJSU do the same?

Some institutions choose to bear a greater share of research costs than others. Reasons why usually correspond to the institution’s prescribed research agenda and its ability to justify for the university to absorb those F&A costs. For the most part those institutions have a budget absorbing some of those costs. A lower F&A rate does not usually mean the research costs are less at one institution than another. More likely it suggests that the costs are being shifted to the university or the state’s taxpayers and not charged to the sponsor.

11) I am going on sabbatical. Can I reduce the F&A rate of my award?

No. An awarded indirect rate cannot be reduced for purposes of a sabbatical leave. Sabbatical leave is for an individual, not the project. When SJSU resources are utilized, full indirect rates for that project will apply. Reducing the indirects for a portion of a grant is not an allowable option. 

The on-campus/off-campus rate for any project will have been determined at submission. Regardless of sabbatical leave, that indirect rate will be maintained.

12) May I reduce the indirect rate on my project while I am on sabbatical, and return it to the previous rate when I return from sabbatical?

No. Fluctuating indirect rates are not allowable. Please see question #11; reducing indirects for a portion of the grant period is not an allowable option. Once the sponsor has committed to the level of indirects, that level is maintained for the life of the grant's overall period of performance. Taking sabbatical will not affect the rate determined at submission and committed to by the sponsor.


For additional information, please consult the Uniform Guidance.

Uniform Guidance 2 CFR Part 200 establishes principles for determining costs applicable to grants, contracts, and other agreements with educational institutions. The principles are designed to provide that the Federal Government bear its fair share of total costs, determined in accordance with generally accepted accounting principles, except where restricted or prohibited by law.